blastp

Protein-Protein BLAST. More information: https://www.ncbi.nlm.nih.gov/books/NBK279684/table/appendices.T.blastp_application_options/.

blastp -query query.fa -subject subject.fa -evalue 1e-9

blastp -task blastp-fast -query query.fa -subject subject.fa

blastp -query query.fa -subject subject.fa -outfmt '6 qseqid qlen qstart qend sseqid slen sstart send bitscore evalue pident' -out output.tsv

blastp -query query.fa -db blast_database_name -num_threads 16 -max_target_seqs 10

blastp -query query.fa -db nr -remote

blastp -h